Index

Symbols

--batch-size python3--m-cleanX-images-run-pipeline command line option --config python3--m-cleanX command line option --config-file python3--m-cleanX command line option --config-reader python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option --input python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option --journal python3--m-cleanX-images-run-pipeline command line option --journal-dir python3--m-cleanX-images-restore-pipeline command line option --keep-journal python3--m-cleanX-images-run-pipeline command line option --label-tag python3--m-cleanX-dataset-report command line option --no-report-bias python3--m-cleanX-dataset-report command line option --no-report-duplicates python3--m-cleanX-dataset-report command line option --no-report-leakage python3--m-cleanX-dataset-report command line option --no-report-understand python3--m-cleanX-dataset-report command line option --output python3--m-cleanX-dataset-report command line option python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option --report-bias python3--m-cleanX-dataset-report command line option --report-duplicates python3--m-cleanX-dataset-report command line option --report-leakage python3--m-cleanX-dataset-report command line option --report-understand python3--m-cleanX-dataset-report command line option --sensitive-category python3--m-cleanX-dataset-report command line option --skip python3--m-cleanX-images-restore-pipeline command line option --source python3--m-cleanX-images-restore-pipeline command line option python3--m-cleanX-images-run-pipeline command line option

--step python3--m-cleanX-images-run-pipeline command line option --test-source python3--m-cleanX-dataset-report command line option --train-source python3--m-cleanX-dataset-report command line option --unique_id python3--m-cleanX-dataset-report command line option --verbosity python3--m-cleanX command line option -b python3--m-cleanX-images-run-pipeline command line option -c python3--m-cleanX command line option python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option -f python3--m-cleanX command line option -i python3--m-cleanX-dataset-report command line option python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option -j python3--m-cleanX-images-restore-pipeline command line option python3--m-cleanX-images-run-pipeline command line option -k python3--m-cleanX-images-run-pipeline command line option -l python3--m-cleanX-dataset-report command line option -o python3--m-cleanX-dataset-report command line option python3--m-cleanX-dicom-extract command line option python3--m-cleanX-dicom-report command line option -r python3--m-cleanX-dataset-report command line option python3--m-cleanX-images-restore-pipeline command line option python3--m-cleanX-images-run-pipeline command line option -s python3--m-cleanX-dataset-report command line option python3--m-cleanX-images-restore-pipeline command line option python3--m-cleanX-images-run-pipeline command line option -t python3--m-cleanX-dataset-report command line option -v python3--m-cleanX command line option

_

__init__() (cleanX.cli.main.Config method) (cleanX.dataset_processing.dataframes.CSVSource method) (cleanX.dataset_processing.dataframes.DFSource method) (cleanX.dataset_processing.dataframes.JSONSource method) (cleanX.dataset_processing.dataframes.MLSetup method) (cleanX.dataset_processing.dataframes.MultiSource method) (cleanX.dataset_processing.dataframes.Report method) (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader method) (cleanX.dicom_processing.simpleitk_adapter.MetadataHelper method) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader method) (cleanX.dicom_processing.source.DirectorySource method) (cleanX.dicom_processing.source.GlobSource method) (cleanX.dicom_processing.source.MultiSource method) (cleanX.image_work.image_functions.Rotator method) (cleanX.image_work.image_functions.Rotator.RotationIterator method) (cleanX.image_work.journaling_pipeline.JournalingPipeline method) (cleanX.image_work.pipeline.DirectorySource method) (cleanX.image_work.pipeline.GlobSource method) (cleanX.image_work.pipeline.MultiSource method) (cleanX.image_work.pipeline.Pipeline method) (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.RegisteredStep method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

__iter__() (cleanX.image_work.image_functions.Rotator.RotationIterator method) (cleanX.image_work.pipeline.DirectorySource method) (cleanX.image_work.pipeline.GlobSource method) (cleanX.image_work.pipeline.MultiSource method) __reduce__() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

A

Acquire (class in cleanX.image_work.steps) add_setting() (cleanX.cli.main.Config method) agg() (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.Mean method) Aggregate (class in cleanX.image_work.steps) aggregate() (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.Mean method) apply() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

avg_image_maker() (in module cleanX.image_work.image_functions) avg_image_maker_by_label() (in module cleanX.image_work.image_functions)

B

begin_transaction() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

bias() (cleanX.dataset_processing.dataframes.MLSetup method) binarize_by_otsu() (in module cleanX.image_work.image_functions) black_end_ratio() (in module cleanX.image_work.image_functions) BlackEdgeCrop (class in cleanX.image_work.steps) blind_noise_matrix() (in module cleanX.image_work.image_functions) blind_quality_matrix() (in module cleanX.image_work.image_functions) blur_out_edges() (in module cleanX.image_work.image_functions) BlurEdges (class in cleanX.image_work.steps)

C

check_paths_for_group_leakage() (in module cleanX.dataset_processing.dataframes) CleanRotate (class in cleanX.image_work.steps) cleanX module cleanX.cli module cleanX.cli.dataset module cleanX.cli.dicom module cleanX.cli.images module cleanX.cli.main module cleanX.dataset_processing module cleanX.dataset_processing.dataframes module cleanX.dicom_processing module cleanX.dicom_processing.pydicom_adapter module cleanX.dicom_processing.simpleitk_adapter module cleanX.dicom_processing.source module cleanX.image_work module cleanX.image_work.image_functions module cleanX.image_work.journaling_pipeline module cleanX.image_work.pipeline module cleanX.image_work.steps module column_sum_folder() (in module cleanX.image_work.image_functions)

ColumnsSource (class in cleanX.dataset_processing.dataframes) commit_transaction() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method) concat_dataframe() (cleanX.dataset_processing.dataframes.MLSetup method) Config (class in cleanX.cli.main) ContourImage (class in cleanX.image_work.steps) create_matrix() (in module cleanX.image_work.image_functions) create_pipeline() (in module cleanX.image_work) create_reader() (in module cleanX.cli.dicom) crop() (in module cleanX.image_work.image_functions) crop_np() (in module cleanX.image_work.image_functions) crop_np_white() (in module cleanX.image_work.image_functions) CSVSource (class in cleanX.dataset_processing.dataframes) cut_or_pad() (in module cleanX.image_work.image_functions) cut_to_size() (in module cleanX.image_work.image_functions) cv2_imread() (in module cleanX.image_work.image_functions) cv2_phash_for_dupes() (in module cleanX.image_work.image_functions) Cv2Error

D

dataframe_up_my_pics() (in module cleanX.image_work.image_functions) date_fields (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader attribute) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader attribute) defaults (cleanX.cli.main.Config attribute) DFSource (class in cleanX.dataset_processing.dataframes) dicom_date_to_date() (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader method) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader method) dicom_time_to_time() (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader method) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader method)

dimensions_to_df() (in module cleanX.image_work.image_functions) dimensions_to_histo() (in module cleanX.image_work.image_functions) DirectorySource (class in cleanX.dicom_processing.source) (class in cleanX.image_work.pipeline) duplicated() (cleanX.dataset_processing.dataframes.MLSetup method) duplicated_frame() (cleanX.dataset_processing.dataframes.MLSetup method) duplicates() (cleanX.dataset_processing.dataframes.MLSetup method)

E

exclude_field_types (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader attribute)

exclude_fields (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader attribute) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader attribute)

F

fetch_image() (cleanX.dicom_processing.simpleitk_adapter.MetadataHelper method) fetch_metadata() (cleanX.dicom_processing.simpleitk_adapter.MetadataHelper method) find_big_lines() (in module cleanX.image_work.image_functions) find_by_sample_upper() (in module cleanX.image_work.image_functions) find_close_images() (in module cleanX.image_work.image_functions) find_duplicated_images() (in module cleanX.image_work.image_functions) find_duplicated_images_todf() (in module cleanX.image_work.image_functions) find_outliers_by_mean_to_df() (in module cleanX.image_work.image_functions) find_outliers_by_total_mean() (in module cleanX.image_work.image_functions) find_outliers_sum_of_pixels_across_set() (in module cleanX.image_work.image_functions) find_sample_upper_greater_than_lower() (in module cleanX.image_work.image_functions) find_suspect_text() (in module cleanX.image_work.image_functions) find_suspect_text_by_length() (in module cleanX.image_work.image_functions) find_tiny_image_differences() (in module cleanX.image_work.image_functions) find_very_hazy() (in module cleanX.image_work.image_functions) fourier_transf() (in module cleanX.image_work.image_functions) FourierTransf (class in cleanX.image_work.steps) from_cmd_args() (cleanX.image_work.steps.Acquire class method) (cleanX.image_work.steps.Aggregate class method) (cleanX.image_work.steps.BlackEdgeCrop class method) (cleanX.image_work.steps.BlurEdges class method) (cleanX.image_work.steps.CleanRotate class method) (cleanX.image_work.steps.ContourImage class method) (cleanX.image_work.steps.FourierTransf class method) (cleanX.image_work.steps.GroupHistoHtWt class method) (cleanX.image_work.steps.GroupHistoPorportion class method) (cleanX.image_work.steps.HistogramNormalize class method) (cleanX.image_work.steps.InvertImages class method) (cleanX.image_work.steps.Mean class method) (cleanX.image_work.steps.Normalize class method) (cleanX.image_work.steps.OtsuBinarize class method) (cleanX.image_work.steps.OtsuLines class method) (cleanX.image_work.steps.Projection class method) (cleanX.image_work.steps.ProjectionHorizoVert class method) (cleanX.image_work.steps.Save class method) (cleanX.image_work.steps.Sharpie class method) (cleanX.image_work.steps.Step class method) (cleanX.image_work.steps.WhiteEdgeCrop class method)

G

generate_report() (cleanX.dataset_processing.dataframes.MLSetup method) get_jpg_with_pydicom() (in module cleanX.dicom_processing.pydicom_adapter) get_known_steps() (in module cleanX.image_work.steps) get_sensitive_list() (cleanX.dataset_processing.dataframes.MLSetup method) get_setting() (cleanX.cli.main.Config method) get_tag() (cleanX.dicom_processing.source.DirectorySource method) (cleanX.dicom_processing.source.GlobSource method) (cleanX.dicom_processing.source.MultiSource method) (cleanX.dicom_processing.source.Source method)

get_unique_id() (cleanX.dataset_processing.dataframes.MLSetup method) give_size_count_df() (in module cleanX.image_work.image_functions) give_size_counted_dfs() (in module cleanX.image_work.image_functions) GlobSource (class in cleanX.dicom_processing.source) (class in cleanX.image_work.pipeline) GroupHistoHtWt (class in cleanX.image_work.steps) GroupHistoPorportion (class in cleanX.image_work.steps) guess_source() (cleanX.dataset_processing.dataframes.MLSetup method) GuesserError

H

harsh_sharpie_enhance() (in module cleanX.image_work.image_functions) hist_sum_of_pixels_across_set() (in module cleanX.image_work.image_functions)

histogram_difference_for_inverts() (in module cleanX.image_work.image_functions) histogram_difference_for_inverts_todf() (in module cleanX.image_work.image_functions) HistogramNormalize (class in cleanX.image_work.steps)

I

image_quality_by_size() (in module cleanX.image_work.image_functions) image_to_histo() (in module cleanX.image_work.image_functions) InvertImages (class in cleanX.image_work.steps) inverts_by_sum_compare() (in module cleanX.image_work.image_functions)

items() (cleanX.dicom_processing.source.DirectorySource method) (cleanX.dicom_processing.source.GlobSource method) (cleanX.dicom_processing.source.MultiSource method) (cleanX.dicom_processing.source.Source method) iter() (cleanX.image_work.image_functions.Rotator method)

J

JournalingPipeline (class in cleanX.image_work.journaling_pipeline)

JSONSource (class in cleanX.dataset_processing.dataframes)

K

known_sources (cleanX.dataset_processing.dataframes.MLSetup attribute)

L

leakage() (cleanX.dataset_processing.dataframes.MLSetup method)

M

make_contour_image() (in module cleanX.image_work.image_functions) make_histo_scaled_folder() (in module cleanX.image_work.image_functions) make_inverted() (in module cleanX.image_work.image_functions) Mean (class in cleanX.image_work.steps) merge() (cleanX.cli.main.Config method) metadata() (cleanX.dataset_processing.dataframes.MLSetup method) MetadataHelper (class in cleanX.dicom_processing.simpleitk_adapter) MLSetup (class in cleanX.dataset_processing.dataframes) module cleanX cleanX.cli cleanX.cli.dataset cleanX.cli.dicom cleanX.cli.images cleanX.cli.main cleanX.dataset_processing cleanX.dataset_processing.dataframes cleanX.dicom_processing cleanX.dicom_processing.pydicom_adapter cleanX.dicom_processing.simpleitk_adapter cleanX.dicom_processing.source cleanX.image_work cleanX.image_work.image_functions cleanX.image_work.journaling_pipeline cleanX.image_work.pipeline cleanX.image_work.steps

mro() (cleanX.image_work.steps.RegisteredStep method) multi_rotation_augmentation_no_pill() (in module cleanX.image_work.image_functions) MultiSource (class in cleanX.dataset_processing.dataframes) (class in cleanX.dicom_processing.source) (class in cleanX.image_work.pipeline)

N

noise_sum_5k() (in module cleanX.image_work.image_functions) noise_sum_7k() (in module cleanX.image_work.image_functions) noise_sum_bilateral() (in module cleanX.image_work.image_functions) noise_sum_bilateralLO() (in module cleanX.image_work.image_functions)

noise_sum_cv() (in module cleanX.image_work.image_functions) noise_sum_gaussian() (in module cleanX.image_work.image_functions) noise_sum_median_blur() (in module cleanX.image_work.image_functions) Normalize (class in cleanX.image_work.steps)

O

OtsuBinarize (class in cleanX.image_work.steps)

OtsuLines (class in cleanX.image_work.steps) outline_segment_by_otsu() (in module cleanX.image_work.image_functions)

P

pad_to_size() (in module cleanX.image_work.image_functions) parse() (cleanX.cli.main.Config method) pics_in_both_groups() (cleanX.dataset_processing.dataframes.MLSetup method) Pipeline (class in cleanX.image_work.pipeline) PipelineError post() (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.Mean method) pre() (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.Mean method) process() (cleanX.image_work.journaling_pipeline.JournalingPipeline method) (cleanX.image_work.pipeline.Pipeline method) process_batch_agg() (cleanX.image_work.journaling_pipeline.JournalingPipeline method) (cleanX.image_work.pipeline.Pipeline method) process_batch_parallel() (cleanX.image_work.journaling_pipeline.JournalingPipeline method) (cleanX.image_work.pipeline.Pipeline method) process_step() (cleanX.image_work.journaling_pipeline.JournalingPipeline method) (cleanX.image_work.pipeline.Pipeline method) Projection (class in cleanX.image_work.steps) ProjectionHorizoVert (class in cleanX.image_work.steps) proportions_ht_wt_to_histo() (in module cleanX.image_work.image_functions) PydicomDicomReader (class in cleanX.dicom_processing.pydicom_adapter) python3--m-cleanX command line option --config --config-file --verbosity -c -f -v python3--m-cleanX-dataset-report command line option --label-tag --no-report-bias --no-report-duplicates --no-report-leakage --no-report-understand --output --report-bias --report-duplicates --report-leakage --report-understand --sensitive-category --test-source --train-source --unique_id -i -l -o -r -s -t

python3--m-cleanX-dicom-extract command line option --config-reader --input --output -c -i -o python3--m-cleanX-dicom-report command line option --config-reader --input --output -c -i -o python3--m-cleanX-images-restore-pipeline command line option --journal-dir --skip --source -j -r -s python3--m-cleanX-images-run-pipeline command line option --batch-size --journal --keep-journal --source --step -b -j -k -r -s

R

read() (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader method) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader method) (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

RegisteredStep (class in cleanX.image_work.steps) rename_file() (in module cleanX.dicom_processing.source) Report (class in cleanX.dataset_processing.dataframes) report_bias() (cleanX.dataset_processing.dataframes.Report method) report_duplicates() (cleanX.dataset_processing.dataframes.Report method) report_leakage() (cleanX.dataset_processing.dataframes.Report method) report_understand() (cleanX.dataset_processing.dataframes.Report method) rescale_range_from_histogram_low_end() (in module cleanX.image_work.image_functions) restore() (cleanX.image_work.journaling_pipeline.JournalingPipeline class method) restore_pipeline() (in module cleanX.image_work) rip_out_jpgs() (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader method) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader method) rip_out_jpgs_sitk() (in module cleanX.dicom_processing.simpleitk_adapter) rotated_with_max_clean_area() (in module cleanX.image_work.image_functions) Rotator (class in cleanX.image_work.image_functions) Rotator.RotationIterator (class in cleanX.image_work.image_functions)

S

salting() (in module cleanX.image_work.image_functions) Save (class in cleanX.image_work.steps) see_part_potential_bias() (in module cleanX.dataset_processing.dataframes) segmented_blind_noise_matrix() (in module cleanX.image_work.image_functions) separate_image_averager() (in module cleanX.image_work.image_functions) set_image_variability() (in module cleanX.image_work.image_functions) Sharpie (class in cleanX.image_work.steps) show_close_images() (in module cleanX.image_work.image_functions) show_duplicates() (in module cleanX.dataset_processing.dataframes) show_images_in_df() (in module cleanX.image_work.image_functions)

show_major_lines_on_image() (in module cleanX.image_work.image_functions) simple_rotate_no_pil() (in module cleanX.image_work.image_functions) simple_spinning_template() (in module cleanX.image_work.image_functions) SimpleITKDicomReader (class in cleanX.dicom_processing.simpleitk_adapter) Source (class in cleanX.dicom_processing.source) Step (class in cleanX.image_work.steps) string_source() (in module cleanX.dataset_processing.dataframes) subsection_html() (cleanX.dataset_processing.dataframes.Report method) subsection_text() (cleanX.dataset_processing.dataframes.Report method) subtle_sharpie_enhance() (in module cleanX.image_work.image_functions)

T

tesseract_specific() (in module cleanX.image_work.image_functions) time_fields (cleanX.dicom_processing.pydicom_adapter.PydicomDicomReader attribute) (cleanX.dicom_processing.simpleitk_adapter.SimpleITKDicomReader attribute) to_dataframe() (cleanX.dataset_processing.dataframes.ColumnsSource method) (cleanX.dataset_processing.dataframes.CSVSource method) (cleanX.dataset_processing.dataframes.DFSource method) (cleanX.dataset_processing.dataframes.JSONSource method) (cleanX.dataset_processing.dataframes.MultiSource method) to_ipwidget() (cleanX.dataset_processing.dataframes.Report method) to_json() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

to_text() (cleanX.dataset_processing.dataframes.Report method)

U

understand_df() (in module cleanX.dataset_processing.dataframes)

W

WhiteEdgeCrop (class in cleanX.image_work.steps) write() (cleanX.image_work.steps.Acquire method) (cleanX.image_work.steps.Aggregate method) (cleanX.image_work.steps.BlackEdgeCrop method) (cleanX.image_work.steps.BlurEdges method) (cleanX.image_work.steps.CleanRotate method) (cleanX.image_work.steps.ContourImage method) (cleanX.image_work.steps.FourierTransf method) (cleanX.image_work.steps.GroupHistoHtWt method) (cleanX.image_work.steps.GroupHistoPorportion method) (cleanX.image_work.steps.HistogramNormalize method) (cleanX.image_work.steps.InvertImages method) (cleanX.image_work.steps.Mean method) (cleanX.image_work.steps.Normalize method) (cleanX.image_work.steps.OtsuBinarize method) (cleanX.image_work.steps.OtsuLines method) (cleanX.image_work.steps.Projection method) (cleanX.image_work.steps.ProjectionHorizoVert method) (cleanX.image_work.steps.Save method) (cleanX.image_work.steps.Sharpie method) (cleanX.image_work.steps.Step method) (cleanX.image_work.steps.WhiteEdgeCrop method)

Z

zero_to_twofivefive_simplest_norming() (in module cleanX.image_work.image_functions)